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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
257
ChIP-seq
89
total RNA-seq
9
WGBS
6
RRBS
Assay category
257
DNA binding
89
Transcription
15
DNA methylation
DNA accessibility
Target of assay
183
histone modification
182
histone
104
broad histone mark
77
narrow histone mark
50
control
24
transcription factor
7
RNA binding protein
3
chromatin remodeller
Date released
666
February, 2021
396
November, 2017
365
May, 2021
361
August, 2017
281
October, 2019
241
May, 2020
August, 2021
168
July, 2018
120
May, 2019
101
May, 2022
100
February, 2023
100
July, 2019
93
December, 2017
80
April, 2019
76
October, 2018
75
November, 2018
60
March, 2020
56
September, 2020
49
April, 2018
47
September, 2023
40
May, 2024
39
February, 2018
35
December, 2018
35
November, 2019
31
June, 2019
30
January, 2019
27
September, 2018
25
February, 2020
14
November, 2020
11
October, 2017
10
December, 2019
9
April, 2020
6
September, 2017
5
January, 2018
5
March, 2023
4
August, 2018
4
May, 2023
4
October, 2022
3
June, 2018
1
March, 2019
Available data
239
fastq
233
bam
223
bigWig
131
bed narrowPeak
89
tsv
85
tagAlign
39
bed broadPeak
32
bigBed narrowPeak
19
bed bed3+
13
bigBed broadPeak
6
bed bedMethyl
6
bigBed bedMethyl
Organism
354
Homo sapiens
Biosample type
257
tissue
62
in vitro differentiated cells
42
primary cell
Organ
161
pancreas
106
connective tissue
52
liver
44
adipose tissue
26
epithelium
26
musculature of body
Project
361
AMP
Genome assembly (visualization)
227
hg19
203
GRCh38
Lab
361
AMP-T2D consortium
Audit category:
missing controlled_by
Audit category:
16
inconsistent control read length
3
inconsistent assembly
1
inconsistent control run_type
audit.NOT_COMPLIANT.category!
missing controlled_by
month_released!
August, 2021
assay_slims!
DNA accessibility
BIOSAMPLE
ASSAY
361 results
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Clear Filters
ChIP-seq
total RNA-seq
WGBS
RRBS
tissue
islet of Langerhans
32
89
liver
48
3
1
subcutaneous abdominal adipose tissue
36
3
skeletal muscle tissue
22
4
pancreas
14
+ See 1 more…
in vitro differentiated cells
adipocyte
62
primary cell
skeletal muscle myoblast
15
1
pancreatic alpha cell
13
pancreatic beta cell
13
See all biosamples
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