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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
452
ChIP-seq
104
total RNA-seq
10
ATAC-seq
2
DNase-seq
1
WGBS
Assay category
452
DNA binding
104
Transcription
12
DNA accessibility
1
DNA methylation
Target of assay
337
transcription factor
88
recombinant protein
76
control
62
RNA binding protein
34
histone
34
histone modification
24
chromatin remodeller
18
broad histone mark
16
narrow histone mark
2
other context
2
other post-translational modification
Date released
304
November, 2017
95
February, 2021
58
November, 2018
29
October, 2019
27
December, 2018
23
January, 2019
15
November, 2019
8
August, 2021
5
March, 2020
5
May, 2021
Available data
569
bam
510
bigWig
414
fastq
392
bed narrowPeak
343
bigBed narrowPeak
119
tsv
59
bed broadPeak
59
bigBed broadPeak
20
tagAlign
3
bed bed3+
3
tar
2
bedpe bed3+
2
hic
1
bed bed3
1
bed bedMethyl
1
bigBed bedMethyl
1
hdf5
1
txt
1
vcf
Organism
569
Homo sapiens
Biosample type
1882
tissue
569
cell line
560
primary cell
285
in vitro differentiated cells
3
stem cell
Organ
353
liver
66
artery
66
blood vessel
66
heart
66
vasculature
63
pancreas
60
blood
60
bodily fluid
51
epithelium
15
kidney
8
embryo
Project
565
AMP
4
T1D
Genome assembly (visualization)
497
hg19
458
GRCh38
Lab
569
AMP-T2D consortium
Audit category:
62
inconsistent ontology term
1
inconsistent control
1
inconsistent replicate
Audit category:
missing controlled_by
Audit category:
21
inconsistent control read length
2
inconsistent control run_type
audit.NOT_COMPLIANT.category!
missing controlled_by
month_released!
December, 2019
BIOSAMPLE
ASSAY
569 results
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ChIP-seq
total RNA-seq
ATAC-seq
DNase-seq
WGBS
cell line
HepG2
346
5
1
1
smooth muscle cell of the coronary artery
6
52
8
GM12878
60
EndoC_BH1
15
33
1
Panc1
13
1
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