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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
398
total RNA-seq
60
ChIP-seq
6
ATAC-seq
6
WGBS
3
small RNA-seq
2
pCHi-C
1
RNA microarray
Assay category
401
Transcription
60
DNA binding
6
DNA accessibility
6
DNA methylation
Target of assay
31
histone
31
histone modification
24
control
20
broad histone mark
11
narrow histone mark
5
RNA binding protein
5
transcription factor
Date released
386
February, 2021
44
August, 2017
23
October, 2018
12
July, 2019
2
February, 2020
1
August, 2018
1
August, 2021
1
February, 2023
1
January, 2018
1
March, 2020
1
May, 2023
1
November, 2019
1
October, 2017
1
October, 2019
Available data
430
bam
413
bigWig
401
tsv
32
fastq
13
bed narrowPeak
10
bigBed narrowPeak
8
tagAlign
bed broadPeak
2
bed bed3+
2
bed bedMethyl
2
bigBed bedMethyl
2
bigBed broadPeak
1
bedpe bed3+
Organism
475
Homo sapiens
Biosample type
473
tissue
2
primary cell
1
in vitro differentiated cells
Organ
871
pancreas
710
liver
657
connective tissue
476
adipose tissue
475
epithelium
363
heart
273
kidney
237
brain
219
vasculature
217
blood vessel
159
bone element
137
artery
86
limb
69
blood
69
bodily fluid
57
eye
50
musculature of body
41
nerve
36
embryo
24
spleen
20
lung
18
vein
16
skeleton
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
476
AMP
Genome assembly (visualization)
411
hg19
410
GRCh38
Lab
476
AMP-T2D consortium
Audit category:
1
inconsistent ontology term
Audit category:
missing controlled_by
audit.NOT_COMPLIANT.category!
missing controlled_by
month_released!
December, 2019
files.file_type!
bed broadPeak
BIOSAMPLE
ASSAY
476 results
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total RNA-seq
ChIP-seq
ATAC-seq
WGBS
small RNA-seq
pCHi-C
RNA microarray
tissue
adipose tissue
382
2
3
3
1
subcutaneous abdominal adipose tissue
35
3
subcutaneous adipose tissue
7
12
1
1
1
omental fat pad
5
11
1
1
visceral abdominal adipose tissue
3
+ See 1 more…
primary cell
mesenchymal stem cell of adipose
1
1
in vitro differentiated cells
white fat cell
1
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