Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
10
Hi-C
1
pCHi-C
Assay category
10
3D chromatin structure
Date released
March, 2020
3
October, 2019
3
October, 2022
2
August, 2021
2
November, 2019
1
August, 2018
Available data
2716
bam
2512
bigWig
1743
bed narrowPeak
1224
fastq
1027
bigBed narrowPeak
996
tsv
386
tagAlign
320
bed broadPeak
285
bigBed broadPeak
257
bed bed3+
153
zippedFastqFolder
72
txt
64
xls
36
bed bedMethyl
36
bigBed bedMethyl
13
hic
11
bedpe bed3+
10
bed bed3
5
hdf5
4
tar
3
bed bedgraph
3
cool
2
csv
1
bedpe
1
tagAlign bed3+
1
vcf
Organism
11
Homo sapiens
Biosample type
3
in vitro differentiated cells
3
primary cell
3
tissue
2
cell line
Organ
6
pancreas
4
epithelium
1
adipose tissue
1
connective tissue
1
heart
1
liver
Project
8
AMP
3
HPAP
Genome assembly (visualization)
9
hg19
Lab
6
AMP-T2D consortium
3
Klaus Kaestner, Upenn
2
Bing Ren, UCSD
Audit category:
3
audit script error
3
inconsistent ontology term
audit.NOT_COMPLIANT.category!
missing controlled_by
month_released!
February, 2021
March, 2020
BIOSAMPLE
ASSAY
11 results
search-icon
table-tab-icon
Clear Filters
Hi-C
pCHi-C
in vitro differentiated cells
cardiac precursors (cardiac muscle cell)
1
cardiomyocytes (cardiac muscle cell)
1
white fat cell
1
primary cell
pancreatic acinar cell
1
pancreatic alpha cell
1
pancreatic beta cell
1
tissue
islet of Langerhans
2
heart
1
cell line
EndoC_BH1
1
HepG2
1
Download