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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
160
ChIP-seq
Assay category
438
Transcription
160
DNA binding
157
DNA accessibility
53
DNA methylation
9
3D chromatin structure
Target of assay
101
histone
101
histone modification
56
broad histone mark
47
control
45
narrow histone mark
12
transcription factor
8
RNA binding protein
Date released
72
August, 2017
51
October, 2018
13
November, 2019
13
October, 2019
6
September, 2017
May, 2021
3
March, 2020
2
May, 2019
Available data
140
bam
104
bed narrowPeak
104
bigWig
93
fastq
59
bigBed narrowPeak
16
tagAlign
12
bed broadPeak
11
bed bed3+
Organism
153
Homo sapiens
Biosample type
107
tissue
27
cell line
26
primary cell
Organ
539
liver
214
brain
160
pancreas
136
connective tissue
134
heart
104
epithelium
102
vasculature
99
blood vessel
66
limb
61
adipose tissue
60
blood
60
bodily fluid
52
kidney
39
musculature of body
35
nerve
34
artery
21
embryo
20
spleen
17
vein
5
eye
4
gonad
4
ovary
1
lymph node
1
pituitary gland
Project
157
AMP
3
T1D
Genome assembly (visualization)
106
hg19
100
GRCh38
Lab
160
AMP-T2D consortium
Audit category:
14
inconsistent ontology term
Audit category:
missing controlled_by
Audit category:
9
inconsistent control read length
1
inconsistent assembly
audit.NOT_COMPLIANT.category!
missing controlled_by
month_released!
May, 2021
BIOSAMPLE
ASSAY
160 results
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Clear Filters
ChIP-seq
tissue
islet of Langerhans
40
body of pancreas
35
endocrine pancreas
16
pancreas
16
cell line
EndoC_BH1
14
Panc1
13
primary cell
pancreatic alpha cell
13
pancreatic beta cell
13
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