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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
59
ChIP-seq
34
DNase-seq
6
Hi-C
6
total RNA-seq
5
RRBS
3
WGBS
2
pCHi-C
2
small RNA-seq
1
ATAC-seq
1
single cell RNA-seq
1
snATAC-seq
Assay category
59
DNA binding
36
DNA accessibility
9
Transcription
8
DNA methylation
6
3D chromatin structure
Target of assay
39
histone
39
histone modification
24
broad histone mark
15
narrow histone mark
14
control
6
transcription factor
3
other context
3
other post-translational modification
Date released
43
June, 2019
26
August, 2017
10
July, 2019
9
November, 2018
7
December, 2018
7
January, 2019
7
May, 2019
6
March, 2020
2
February, 2020
2
May, 2022
1
January, 2018
October, 2017
Available data
83
bigWig
80
bam
73
bed narrowPeak
60
bigBed narrowPeak
47
bed broadPeak
35
bed bed3+
34
bigBed broadPeak
25
fastq
15
tagAlign
10
tsv
6
bed bedMethyl
6
bigBed bedMethyl
2
bedpe bed3+
2
hic
1
txt
Organism
120
Homo sapiens
Biosample type
106
tissue
14
primary cell
Organ
887
pancreas
778
liver
666
connective tissue
503
epithelium
478
adipose tissue
393
heart
354
kidney
270
brain
236
vasculature
230
blood vessel
159
bone element
141
artery
122
limb
96
musculature of body
69
blood
69
bodily fluid
61
eye
43
nerve
36
embryo
24
spleen
22
vein
20
lung
18
ureter
16
skeleton
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
120
AMP
Genome assembly (visualization)
86
hg19
68
GRCh38
Lab
120
AMP-T2D consortium
Audit category:
9
inconsistent ontology term
1
audit script error
audit.NOT_COMPLIANT.category!
missing controlled_by
month_released!
October, 2017
BIOSAMPLE
ASSAY
120 results
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ChIP-seq
DNase-seq
Hi-C
total RNA-seq
RRBS
WGBS
pCHi-C
small RNA-seq
ATAC-seq
single cell RNA-seq
snATAC-seq
tissue
skeletal muscle tissue
22
1
4
1
1
1
1
spleen
20
1
2
1
muscle of leg
7
13
1
muscle of arm
17
gastrocnemius medialis
4
1
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primary cell
skeletal muscle satellite cell
8
1
1
skeletal muscle cell
2
1
1
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