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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
93
ChIP-seq
11
ATAC-seq
3
single cell RNA-seq
1
total RNA-seq
Assay category
93
DNA binding
11
DNA accessibility
4
Transcription
Target of assay
42
transcription factor
30
histone
30
histone modification
21
control
15
broad histone mark
15
narrow histone mark
4
RNA binding protein
3
chromatin remodeller
Date released
715
February, 2021
399
May, 2021
396
November, 2017
372
August, 2017
341
May, 2020
319
August, 2021
314
October, 2019
218
June, 2019
205
February, 2023
200
May, 2022
168
July, 2018
120
May, 2019
108
July, 2019
93
December, 2017
85
November, 2018
80
April, 2019
76
October, 2018
64
March, 2020
61
November, 2019
59
September, 2020
49
April, 2018
47
September, 2023
41
September, 2018
39
February, 2018
35
December, 2018
30
January, 2019
25
February, 2020
19
April, 2020
19
October, 2017
16
January, 2021
16
November, 2020
15
May, 2023
11
September, 2017
10
December, 2019
8
January, 2018
7
August, 2020
5
March, 2019
5
March, 2023
4
August, 2018
4
October, 2022
3
June, 2018
1
August, 2022
Available data
93
bam
93
fastq
72
bed narrowPeak
72
bigWig
50
bigBed narrowPeak
15
bed bed3+
Organism
108
Homo sapiens
Biosample type
63
tissue
42
in vitro differentiated cells
3
stem cell
Organ
63
liver
19
epithelium
14
kidney
12
embryo
1
adipose tissue
1
connective tissue
Project
108
AMP
Genome assembly (visualization)
89
GRCh38
78
hg19
Lab
94
AMP-T2D consortium
14
Katalin Susztak, Upenn
Audit category:
27
inconsistent control
4
inconsistent ontology term
Audit category:
missing controlled_by
Audit category:
11
inconsistent control read length
audit.NOT_COMPLIANT.category!
missing controlled_by
BIOSAMPLE
ASSAY
108 results
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Clear Filters
ChIP-seq
ATAC-seq
single cell RNA-seq
total RNA-seq
tissue
liver
38
kidney
11
3
right lobe of liver
10
adipose tissue
1
in vitro differentiated cells
hepatocyte
15
pancreatic endoderm
8
Posterior foregut
5
definitive endodermal cell
5
primitive gut cell
5
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stem cell
hESC
3
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