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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
11
ChIP-seq
8
ATAC-seq
5
total RNA-seq
3
single cell RNA-seq
2
RNA microarray
Assay category
11
DNA binding
8
DNA accessibility
8
Transcription
Target of assay
8
histone
8
histone modification
7
broad histone mark
3
control
1
narrow histone mark
Date released
715
February, 2021
399
May, 2021
396
November, 2017
372
August, 2017
341
May, 2020
319
August, 2021
314
October, 2019
218
June, 2019
205
February, 2023
200
May, 2022
168
July, 2018
120
May, 2019
108
July, 2019
93
December, 2017
85
November, 2018
80
April, 2019
76
October, 2018
64
March, 2020
61
November, 2019
59
September, 2020
49
April, 2018
47
September, 2023
September, 2018
40
May, 2024
39
February, 2018
35
December, 2018
30
January, 2019
25
February, 2020
19
April, 2020
19
October, 2017
16
January, 2021
16
November, 2020
15
May, 2023
11
September, 2017
10
December, 2019
8
January, 2018
7
August, 2020
5
March, 2019
5
March, 2023
4
August, 2018
4
October, 2022
3
June, 2018
1
August, 2022
Available data
17
bam
16
bigWig
13
fastq
10
tagAlign
9
bed narrowPeak
9
tsv
3
bigBed narrowPeak
2
bed broadPeak
Organism
29
Homo sapiens
Biosample type
22
tissue
5
primary cell
2
in vitro differentiated cells
Organ
12
brain
6
epithelium
5
liver
5
pancreas
3
kidney
1
adipose tissue
1
connective tissue
1
spleen
Project
29
AMP
Genome assembly (visualization)
16
GRCh38
15
hg19
Lab
28
AMP-T2D consortium
1
Stephen Parker, UMich
Audit category:
4
audit script error
2
inconsistent ontology term
Audit category:
missing controlled_by
audit.NOT_COMPLIANT.category!
missing controlled_by
month_released!
September, 2018
BIOSAMPLE
ASSAY
29 results
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Clear Filters
ChIP-seq
ATAC-seq
total RNA-seq
single cell RNA-seq
RNA microarray
tissue
brain
11
body of pancreas
4
cerebellum (Hemisphere)
1
islet of Langerhans
1
kidney
1
+ See 4 more…
primary cell
hepatocyte
5
in vitro differentiated cells
cardiomyocytes (cardiac muscle cell)
2
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