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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
396
ChIP-seq
120
total RNA-seq
48
single cell RNA-seq
Assay category
396
DNA binding
168
Transcription
Target of assay
235
transcription factor
87
histone
87
histone modification
71
control
66
recombinant protein
50
broad histone mark
37
narrow histone mark
35
RNA binding protein
11
chromatin remodeller
2
other context
2
other post-translational modification
Date released
715
February, 2021
399
May, 2021
396
November, 2017
372
August, 2017
341
May, 2020
319
August, 2021
314
October, 2019
218
June, 2019
205
February, 2023
200
May, 2022
168
July, 2018
120
May, 2019
108
July, 2019
93
December, 2017
85
November, 2018
80
April, 2019
76
October, 2018
64
March, 2020
61
November, 2019
59
September, 2020
49
April, 2018
47
September, 2023
41
September, 2018
40
May, 2024
39
February, 2018
35
December, 2018
30
January, 2019
25
February, 2020
19
April, 2020
19
October, 2017
16
January, 2021
16
November, 2020
15
May, 2023
11
September, 2017
10
December, 2019
8
January, 2018
7
August, 2020
5
March, 2019
5
March, 2023
4
August, 2018
4
October, 2022
3
June, 2018
1
August, 2022
Available data
546
bam
488
bigWig
364
fastq
303
bed narrowPeak
302
bigBed narrowPeak
164
tsv
78
tagAlign
70
bed broadPeak
64
bigBed broadPeak
3
tar
Organism
564
Homo sapiens
Biosample type
305
cell line
202
tissue
57
primary cell
Organ
305
liver
157
pancreas
91
brain
39
epithelium
6
vasculature
3
blood vessel
2
connective tissue
Project
564
AMP
Genome assembly (visualization)
441
GRCh38
435
hg19
Lab
564
AMP-T2D consortium
Audit category:
6
inconsistent ontology term
Audit category:
missing controlled_by
Audit category:
18
inconsistent control read length
audit.NOT_COMPLIANT.category!
missing controlled_by
BIOSAMPLE
ASSAY
564 results
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Clear Filters
ChIP-seq
total RNA-seq
single cell RNA-seq
cell line
HepG2
305
tissue
islet of Langerhans
120
layer of hippocampus
22
caudate nucleus
15
substantia nigra
15
cingulate gyrus
14
+ See 2 more…
primary cell
pancreatic beta cell
9
pancreatic alpha cell
7
pancreatic acinar cell
5
pancreatic delta cell
4
astrocyte of the cerebellum
3
+ See 13 more…
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