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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
171
ChIP-seq
130
total RNA-seq
42
ATAC-seq
5
pCHi-C
4
Hi-C
3
GRO-seq
2
Capture-C
2
single cell RNA-seq
1
DNase-seq
Assay category
171
DNA binding
132
Transcription
43
DNA accessibility
4
3D chromatin structure
Target of assay
100
histone
100
histone modification
52
broad histone mark
47
narrow histone mark
41
transcription factor
30
control
11
RNA binding protein
3
chromatin remodeller
Date released
130
May, 2021
63
August, 2017
42
August, 2021
30
December, 2017
26
February, 2018
26
February, 2021
16
February, 2023
8
March, 2020
8
October, 2019
5
November, 2019
3
January, 2018
2
December, 2019
1
August, 2018
Available data
258
bam
233
bigWig
125
tsv
118
bed narrowPeak
109
fastq
40
tagAlign
22
bed bed3+
17
bigBed narrowPeak
7
bed bedgraph
7
bedpe bed3+
5
bed bed3
4
hic
3
txt
2
ibed
1
bed broadPeak
1
bigBed broadPeak
Organism
360
Homo sapiens
Biosample type
2711
tissue
1044
primary cell
641
cell line
360
in vitro differentiated cells
10
stem cell
Organ
92
connective tissue
embryo
24
epithelium
15
liver
3
pancreas
1
adipose tissue
1
heart
Project
360
AMP
Genome assembly (visualization)
271
hg19
239
GRCh38
3
hg18
Lab
306
AMP-T2D consortium
47
Kyle Gaulton, UCSD
7
Struan F.A. Grant, CHOP
Audit category:
109
inconsistent ontology term
2
audit script error
Audit category:
missing controlled_by
Audit category:
14
inconsistent control read length
audit.NOT_COMPLIANT.category!
missing controlled_by
organ_slims!
embryo
BIOSAMPLE
ASSAY
360 results
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ChIP-seq
total RNA-seq
ATAC-seq
pCHi-C
Hi-C
GRO-seq
Capture-C
single cell RNA-seq
DNase-seq
in vitro differentiated cells
adipocyte
62
5
8
1
1
cardiomyocytes
3
59
embryonic stem cell
40
7
6
1
neural progenitor cell
21
7
10
cardiac precursors (cardiac muscle cell)
19
1
1
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