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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
88
ChIP-seq
Assay category
88
DNA binding
Target of assay
959
histone modification
958
histone
481
narrow histone mark
479
transcription factor
476
broad histone mark
343
control
111
RNA binding protein
88
recombinant protein
30
chromatin remodeller
5
nucleotide modification
5
other context
5
other post-translational modification
Date released
66
November, 2017
15
November, 2018
7
October, 2019
Available data
88
bam
88
bed narrowPeak
88
bigWig
81
bigBed narrowPeak
81
fastq
Organism
88
Homo sapiens
Biosample type
88
cell line
Organ
81
liver
7
kidney
Project
88
AMP
Genome assembly (visualization)
88
GRCh38
85
hg19
Lab
88
AMP-T2D consortium
Audit category:
7
inconsistent ontology term
Audit category:
missing controlled_by
Audit category:
1
inconsistent control read length
audit.NOT_COMPLIANT.category!
missing controlled_by
organ_slims!
gonad
award.project!
HPAP
BIOSAMPLE
ASSAY
88 results
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ChIP-seq
cell line
HepG2
81
RCC 7860 HIF1a re-expression
3
RCC 7860 HIF2a over-expression
2
RCC 7860 vector
2
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