Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
1547
ChIP-seq
1286
total RNA-seq
331
ATAC-seq
176
single cell RNA-seq
163
DNase-seq
87
RNA microarray
40
pCHi-C
28
WGBS
28
snATAC-seq
24
Hi-C
16
small RNA-seq
11
RRBS
10
MeRIP-seq
5
GRO-seq
5
STARR-seq
4
Capture-C
4
FAIRE-seq
3
CRISPR genome editing followed by DNA sequencing
3
snDrop-seq
2
HiChIP
1
CRISPR RNA-seq
1
CRISPR genome editing followed by sgRNA sequencing
1
CRISPRi RNA-seq
1
MPRA
1
shRNA RNA-seq
1
siRNA RNA-seq
1
whole genome sequencing assay
Assay category
163
DNA accessibility
Date released
145
June, 2019
9
November, 2018
6
October, 2019
3
August, 2017
Available data
162
bam
162
bed narrowPeak
162
bigBed narrowPeak
162
bigWig
160
bed broadPeak
160
bigBed broadPeak
159
bed bed3+
11
fastq
Organism
163
Homo sapiens
Biosample type
160
tissue
primary cell
2
cell line
1
in vitro differentiated cells
Organ
69
kidney
36
limb
32
musculature of body
27
brain
27
heart
ureter
8
pancreas
5
blood vessel
5
vasculature
4
artery
4
liver
3
connective tissue
3
eye
2
adipose tissue
2
nerve
1
epithelium
1
spleen
Project
163
AMP
Genome assembly (visualization)
162
GRCh38
146
hg19
Lab
163
AMP-T2D consortium
Audit category:
1
inconsistent ontology term
audit.NOT_COMPLIANT.category!
missing controlled_by
organ_slims!
ureter
biosample_type!
primary cell
BIOSAMPLE
ASSAY
163 results
search-icon
table-tab-icon
Clear Filters
DNase-seq
tissue
heart
18
muscle of arm
17
brain
14
kidney
13
muscle of leg
13
+ See 37 more…
cell line
Panc1
1
glomerular visceral epithelial cell
1
in vitro differentiated cells
adipocyte
1
See all biosamples
Download