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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
18
ChIP-seq
14
total RNA-seq
10
snATAC-seq
9
single cell RNA-seq
1
GRO-seq
1
pCHi-C
Assay category
23
Transcription
18
DNA binding
10
DNA accessibility
Target of assay
9
histone
9
histone modification
6
control
6
narrow histone mark
3
broad histone mark
3
transcription factor
Date released
19
April, 2020
13
February, 2018
9
December, 2017
8
August, 2021
2
May, 2021
1
January, 2018
1
March, 2020
Available data
35
bam
29
bigWig
26
fastq
15
tsv
14
bed narrowPeak
bed bed3+
Organism
52
Homo sapiens
Biosample type
25
in vitro differentiated cells
20
tissue
8
cell line
Organ
873
pancreas
765
liver
644
connective tissue
482
epithelium
477
adipose tissue
363
heart
276
kidney
247
brain
223
vasculature
219
blood vessel
159
bone element
137
artery
86
limb
69
blood
69
bodily fluid
62
musculature of body
57
eye
41
nerve
33
embryo
24
spleen
20
lung
20
vein
16
skeleton
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
34
AMP
19
LungMap
Genome assembly (visualization)
26
GRCh38
26
hg19
1
hg18
Lab
34
AMP-T2D consortium
19
Xin Sun, UCSD
Audit category:
6
inconsistent ontology term
Audit category:
missing controlled_by
Audit category:
2
inconsistent control read length
audit.NOT_COMPLIANT.category!
missing controlled_by
files.file_type!
bed bed3+
BIOSAMPLE
ASSAY
53 results
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Clear Filters
ChIP-seq
total RNA-seq
snATAC-seq
single cell RNA-seq
GRO-seq
pCHi-C
in vitro differentiated cells
pancreatic endoderm
14
4
1
Hepatic endoderm
4
mesodermal cell (lineage marker-negative)
1
mesodermal cell (pacemaker intermediate)
1
tissue
lung
10
9
1
cell line
H1-hESC
8
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