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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
55
ChIP-seq
5
total RNA-seq
3
DNase-seq
2
ATAC-seq
2
WGBS
Assay category
55
DNA binding
5
DNA accessibility
5
Transcription
2
DNA methylation
Target of assay
30
histone
30
histone modification
20
broad histone mark
19
control
10
narrow histone mark
6
transcription factor
3
other context
3
other post-translational modification
Date released
42
October, 2019
9
November, 2018
7
December, 2018
7
January, 2019
1
February, 2020
March, 2020
1
October, 2017
Available data
66
bam
47
bigWig
41
bed narrowPeak
39
bigBed narrowPeak
24
fastq
5
tsv
3
bed bed3+
3
bed broadPeak
3
bigBed broadPeak
2
bed bedMethyl
2
bigBed bedMethyl
Organism
67
Homo sapiens
Biosample type
67
tissue
Organ
878
pancreas
775
liver
665
connective tissue
497
epithelium
478
adipose tissue
386
heart
352
kidney
280
brain
232
vasculature
226
blood vessel
159
bone element
141
artery
122
limb
91
musculature of body
69
blood
69
bodily fluid
61
eye
43
nerve
36
embryo
24
spleen
21
vein
19
lung
18
ureter
16
skeleton
4
gonad
4
ovary
2
pericardium
2
pituitary gland
1
bone marrow
1
lymph node
1
skin of body
1
spinal cord
1
thymus
Project
67
AMP
Genome assembly (visualization)
47
GRCh38
45
hg19
Lab
67
AMP-T2D consortium
audit.NOT_COMPLIANT.category!
missing controlled_by
month_released!
March, 2020
BIOSAMPLE
ASSAY
67 results
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Clear Filters
ChIP-seq
total RNA-seq
DNase-seq
ATAC-seq
WGBS
tissue
tibial nerve
35
5
2
1
spleen
20
1
1
2
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