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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
202
ChIP-seq
89
total RNA-seq
6
WGBS
5
RRBS
4
ATAC-seq
4
DNase-seq
1
FAIRE-seq
Assay category
202
DNA binding
89
Transcription
11
DNA methylation
9
DNA accessibility
Target of assay
144
histone
144
histone modification
81
broad histone mark
62
narrow histone mark
38
control
20
transcription factor
7
RNA binding protein
3
chromatin remodeller
Date released
712
February, 2021
399
May, 2021
311
August, 2017
307
October, 2019
283
August, 2021
216
June, 2019
204
February, 2023
168
July, 2018
160
May, 2022
147
May, 2020
120
May, 2019
98
July, 2019
91
November, 2017
80
April, 2019
76
October, 2018
61
March, 2020
61
November, 2019
59
September, 2020
49
April, 2018
47
September, 2023
41
September, 2018
40
May, 2024
39
February, 2018
35
November, 2018
34
December, 2018
30
December, 2017
25
January, 2019
24
February, 2020
19
October, 2017
18
April, 2020
16
January, 2021
16
November, 2020
15
May, 2023
11
September, 2017
8
January, 2018
7
August, 2020
5
December, 2019
5
March, 2019
4
August, 2018
3
June, 2018
3
October, 2022
1
August, 2022
1
March, 2023
Available data
213
fastq
210
bam
209
bigWig
117
bed narrowPeak
89
tsv
58
tagAlign
35
bed broadPeak
30
bigBed narrowPeak
16
bed bed3+
15
bigBed broadPeak
5
bed bedMethyl
5
bigBed bedMethyl
Organism
311
Homo sapiens
Biosample type
201
tissue
63
in vitro differentiated cells
47
primary cell
Organ
159
pancreas
108
connective tissue
liver
45
adipose tissue
29
epithelium
26
musculature of body
Project
311
AMP
Genome assembly (visualization)
211
hg19
185
GRCh38
Lab
311
AMP-T2D consortium
Audit category:
missing controlled_by
Audit category:
15
inconsistent control read length
2
inconsistent assembly
1
inconsistent control run_type
audit.NOT_COMPLIANT.category!
missing controlled_by
organ_slims!
liver
BIOSAMPLE
ASSAY
311 results
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Clear Filters
ChIP-seq
total RNA-seq
WGBS
RRBS
ATAC-seq
DNase-seq
FAIRE-seq
tissue
islet of Langerhans
32
89
1
1
subcutaneous abdominal adipose tissue
36
3
skeletal muscle tissue
22
4
pancreas
7
adipose tissue
2
3
+ See 1 more…
in vitro differentiated cells
adipocyte
62
1
primary cell
skeletal muscle myoblast
15
1
2
pancreatic alpha cell
13
1
pancreatic beta cell
13
1
pancreatic acinar cell
1
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