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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
88
ChIP-seq
5
MeRIP-seq
Assay category
88
DNA binding
Target of assay
928
histone modification
927
histone
474
transcription factor
470
narrow histone mark
456
broad histone mark
343
control
106
RNA binding protein
88
recombinant protein
30
chromatin remodeller
5
nucleotide modification
5
other context
5
other post-translational modification
Date released
66
November, 2017
15
November, 2018
7
October, 2019
5
November, 2020
Available data
88
bam
88
bed narrowPeak
88
bigWig
81
bigBed narrowPeak
81
fastq
Organism
93
Homo sapiens
Biosample type
91
cell line
2
tissue
Organ
81
liver
7
kidney
5
pancreas
3
epithelium
Project
93
AMP
Genome assembly (visualization)
88
GRCh38
85
hg19
Lab
88
AMP-T2D consortium
5
Rohit N. Kulkarni, M.D., Ph.D.
Audit category:
10
inconsistent ontology term
Audit category:
missing controlled_by
Audit category:
1
inconsistent control read length
audit.NOT_COMPLIANT.category!
missing controlled_by
BIOSAMPLE
ASSAY
93 results
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ChIP-seq
MeRIP-seq
cell line
HepG2
81
EndoC_BH1
3
RCC 7860 HIF1a re-expression
3
RCC 7860 HIF2a over-expression
2
RCC 7860 vector
2
tissue
islet of Langerhans
2
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