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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
65
ChIP-seq
Assay category
65
DNA binding
Target of assay
35
transcription factor
33
histone
33
histone modification
18
narrow histone mark
15
broad histone mark
6
chromatin remodeller
RNA binding protein
1
recombinant protein
Date released
38
August, 2017
11
September, 2018
8
November, 2017
4
October, 2017
3
November, 2018
1
December, 2017
Available data
65
fastq
64
bam
62
bigWig
25
bed narrowPeak
13
bed bed3+
13
bigBed narrowPeak
4
tagAlign
2
bed broadPeak
Organism
65
Homo sapiens
Biosample type
25
tissue
23
primary cell
11
cell line
6
in vitro differentiated cells
Organ
53
pancreas
epithelium
17
connective tissue
12
adipose tissue
11
liver
4
brain
1
embryo
Project
65
AMP
Genome assembly (visualization)
62
hg19
56
GRCh38
Lab
65
AMP-T2D consortium
Audit category:
65
missing controlled_by
Audit category:
4
inconsistent control run_type
3
inconsistent control read length
target.investigated_as!
RNA binding protein
organ_slims!
epithelium
BIOSAMPLE
ASSAY
65 results
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Clear Filters
ChIP-seq
tissue
white adipose tissue
12
islet of Langerhans
9
brain
4
primary cell
pancreatic endocrine cell
23
cell line
HepG2
11
in vitro differentiated cells
adipocyte
5
pancreatic endoderm
1
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