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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
51
ChIP-seq
Assay category
51
DNA binding
Target of assay
50
histone
50
histone modification
26
narrow histone mark
25
transcription factor
broad histone mark
6
chromatin remodeller
2
RNA binding protein
1
recombinant protein
Date released
21
August, 2017
15
September, 2018
10
November, 2017
3
November, 2018
1
December, 2017
1
October, 2017
Available data
64
bam
64
fastq
62
bigWig
29
bed narrowPeak
bed bed3+
13
bigBed narrowPeak
1
bed broadPeak
1
tagAlign
Organism
51
Homo sapiens
Biosample type
23
primary cell
13
cell line
9
tissue
6
in vitro differentiated cells
Organ
23
pancreas
13
connective tissue
13
liver
11
epithelium
8
adipose tissue
1
brain
1
embryo
Project
51
AMP
Genome assembly (visualization)
49
hg19
42
GRCh38
Lab
51
AMP-T2D consortium
Audit category:
51
missing controlled_by
Audit category:
6
inconsistent control run_type
5
inconsistent control read length
target.investigated_as!
broad histone mark
files.file_type!
bed bed3+
BIOSAMPLE
ASSAY
51 results
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Clear Filters
ChIP-seq
primary cell
pancreatic endocrine cell
12
pancreatic ductal cell
7
pancreatic acinar cell
4
cell line
HepG2
13
tissue
white adipose tissue
8
brain
1
in vitro differentiated cells
adipocyte
5
pancreatic endoderm
1
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