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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
45
ChIP-seq
1
DNase-seq
Assay category
45
DNA binding
1
DNA accessibility
Target of assay
42
transcription factor
3
chromatin remodeller
3
histone
3
histone modification
2
RNA binding protein
2
broad histone mark
1
narrow histone mark
1
other context
1
other post-translational modification
Date released
45
November, 2017
1
October, 2019
Available data
556
bam
496
bigWig
401
fastq
380
bed narrowPeak
331
bigBed narrowPeak
119
tsv
46
bed broadPeak
46
bigBed broadPeak
9
tagAlign
3
bed bed3+
3
tar
2
bedpe bed3+
2
hic
1
bed bed3
1
bed bedMethyl
1
bigBed bedMethyl
1
hdf5
1
txt
1
vcf
Organism
46
Homo sapiens
Biosample type
213
tissue
49
primary cell
46
cell line
1
in vitro differentiated cells
Organ
45
liver
1
pancreas
Project
46
AMP
Genome assembly (visualization)
46
hg19
34
GRCh38
Lab
46
AMP-T2D consortium
Audit category:
inconsistent control read length
audit.WARNING.category!
inconsistent control read length
BIOSAMPLE
ASSAY
46 results
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ChIP-seq
DNase-seq
cell line
HepG2
45
Panc1
1
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