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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
10
ChIP-seq
4
Hi-C
2
RRBS
2
total RNA-seq
1
WGBS
1
pCHi-C
1
single cell RNA-seq
Assay category
10
DNA binding
4
3D chromatin structure
3
DNA methylation
3
Transcription
Target of assay
6
histone
6
histone modification
4
broad histone mark
4
control
2
narrow histone mark
Date released
11
August, 2017
5
July, 2019
2
February, 2020
1
March, 2020
1
May, 2019
1
May, 2022
Available data
3
tsv
2
bam
2
tagAlign
1
bed bedMethyl
1
bigBed bedMethyl
1
bigWig
Organism
21
Homo sapiens
Biosample type
21
tissue
2
primary cell
Organ
207
kidney
200
heart
122
brain
93
liver
92
pancreas
88
bone element
65
connective tissue
64
adipose tissue
63
blood vessel
63
vasculature
46
artery
26
eye
26
limb
21
musculature of body
20
lung
12
nerve
11
spleen
5
gonad
5
ovary
4
skeleton
3
epithelium
2
intestine
2
thymus
1
adrenal gland
1
esophagus
1
large intestine
1
lymph node
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
21
AMP
Genome assembly (visualization)
hg19
42
GRCh38
Lab
21
AMP-T2D consortium
audit.WARNING.category!
inconsistent control run_type
assembly!
hg19
BIOSAMPLE
ASSAY
21 results
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ChIP-seq
Hi-C
RRBS
total RNA-seq
WGBS
pCHi-C
single cell RNA-seq
tissue
skeletal muscle tissue
9
2
1
gastrocnemius medialis
4
1
muscle of leg
1
1
left ventricle myocardium
1
psoas muscle
1
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