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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
371
ChIP-seq
10
ATAC-seq
Assay category
371
DNA binding
10
DNA accessibility
Target of assay
337
transcription factor
81
recombinant protein
60
RNA binding protein
29
histone
29
histone modification
22
chromatin remodeller
15
narrow histone mark
14
broad histone mark
2
other context
2
other post-translational modification
Date released
245
November, 2017
52
November, 2018
27
December, 2018
15
January, 2019
October, 2019
14
August, 2021
14
February, 2021
12
November, 2019
1
March, 2020
1
May, 2021
Available data
545
bam
494
bigWig
419
fastq
381
bed narrowPeak
339
bigBed narrowPeak
115
tsv
58
bed broadPeak
58
bigBed broadPeak
20
tagAlign
3
tar
2
bedpe bed3+
2
hic
1
bed bed3
1
bed bed3+
1
bed bedMethyl
1
bigBed bedMethyl
1
txt
1
vcf
Organism
381
Homo sapiens
Biosample type
833
tissue
381
cell line
273
primary cell
130
in vitro differentiated cells
2
stem cell
Organ
300
liver
54
blood
54
bodily fluid
14
epithelium
14
pancreas
12
artery
12
blood vessel
12
heart
12
vasculature
Project
379
AMP
2
T1D
Genome assembly (visualization)
377
hg19
337
GRCh38
Lab
367
AMP-T2D consortium
14
Bing Ren, UCSD
Audit category:
14
inconsistent ontology term
1
inconsistent control
1
inconsistent replicate
Audit category:
6
missing controlled_by
Audit category:
24
inconsistent control read length
inconsistent control run_type
audit.WARNING.category!
inconsistent control run_type
month_released!
October, 2019
BIOSAMPLE
ASSAY
381 results
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ChIP-seq
ATAC-seq
cell line
HepG2
299
1
GM12878
54
EndoC_BH1
13
1
smooth muscle cell of the coronary artery
4
8
iPSC derived cell line
1
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