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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
412
ChIP-seq
5
total RNA-seq
1
Hi-C
1
WGBS
Assay category
412
DNA binding
5
Transcription
1
3D chromatin structure
1
DNA methylation
Target of assay
329
transcription factor
82
recombinant protein
62
control
60
RNA binding protein
22
chromatin remodeller
16
histone
16
histone modification
8
broad histone mark
8
narrow histone mark
2
other context
2
other post-translational modification
Date released
311
November, 2017
57
November, 2018
28
December, 2018
23
January, 2019
Available data
574
bam
514
bigWig
419
fastq
396
bed narrowPeak
347
bigBed narrowPeak
119
tsv
59
bed broadPeak
59
bigBed broadPeak
20
tagAlign
3
bed bed3+
3
tar
2
bedpe bed3+
2
hic
1
bed bed3
1
bed bedMethyl
1
bigBed bedMethyl
1
hdf5
1
txt
1
vcf
Organism
419
Homo sapiens
Biosample type
419
cell line
408
primary cell
377
tissue
141
in vitro differentiated cells
4
stem cell
Organ
359
liver
60
blood
60
bodily fluid
Project
419
AMP
Genome assembly (visualization)
359
hg19
315
GRCh38
Lab
419
AMP-T2D consortium
Audit category:
1
inconsistent control
Audit category:
7
missing controlled_by
Audit category:
26
inconsistent control read length
inconsistent control run_type
audit.WARNING.category!
inconsistent control run_type
BIOSAMPLE
ASSAY
419 results
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ChIP-seq
total RNA-seq
Hi-C
WGBS
cell line
HepG2
352
5
1
1
GM12878
60
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