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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
59
total RNA-seq
13
single cell RNA-seq
2
ATAC-seq
1
MPRA
1
snATAC-seq
Assay category
72
Transcription
3
DNA accessibility
Date released
57
August, 2021
7
May, 2022
6
February, 2023
5
February, 2021
1
October, 2022
Available data
3177
bam
2969
bigWig
1751
bed narrowPeak
1450
tsv
1343
fastq
1015
bigBed narrowPeak
393
tagAlign
316
bed broadPeak
280
bigBed broadPeak
262
bed bed3+
153
zippedFastqFolder
76
txt
64
xls
34
bed bedMethyl
34
bigBed bedMethyl
12
bed bed3
8
csv
6
bed bedgraph
4
tar
1
bedpe bed3+
1
tagAlign bed3+
1
vcf
Organism
75
Homo sapiens
Biosample type
73
tissue
2
in vitro differentiated cells
1
cell line
Organ
62
kidney
6
pancreas
4
bone element
4
skeleton
1
musculature of body
Project
76
AMP
Genome assembly (visualization)
3
hg19
Lab
57
Katalin Susztak, Upenn
11
AMP-T2D consortium
6
Kyle Gaulton, UCSD
2
Struan F.A. Grant, CHOP
Audit category:
inconsistent ontology term
6
audit script error
audit.WARNING.category!
inconsistent assembly
audit.ERROR.category!
inconsistent ontology term
assay_slims!
3D chromatin structure
BIOSAMPLE
ASSAY
76 results
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total RNA-seq
single cell RNA-seq
ATAC-seq
MPRA
snATAC-seq
tissue
kidney
49
13
islet of Langerhans
6
acetabular part of hip bone
1
ilium
1
ischium
1
+ See 2 more…
in vitro differentiated cells
Progenitor cell of Hypothalamus (neural progenitor cell)
1
embryonic stem cell
1
cell line
MIN6
1
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