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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
904
ChIP-seq
Assay category
1226
Transcription
904
DNA binding
468
DNA accessibility
38
DNA methylation
16
3D chromatin structure
Target of assay
625
histone modification
624
histone
322
narrow histone mark
302
broad histone mark
185
control
94
transcription factor
28
RNA binding protein
3
other context
3
other post-translational modification
2
chromatin remodeller
Date released
193
October, 2019
175
August, 2017
115
May, 2019
82
November, 2017
80
April, 2019
74
October, 2018
50
May, 2020
48
December, 2017
40
May, 2024
15
October, 2017
10
November, 2018
7
December, 2018
7
January, 2019
6
September, 2017
2
March, 2020
Available data
719
bam
612
bigWig
592
bed narrowPeak
376
bigBed narrowPeak
237
tagAlign
219
fastq
34
bed broadPeak
28
bed bed3+
1
tagAlign bed3+
Organism
898
Homo sapiens
Biosample type
904
tissue
459
cell line
252
primary cell
191
in vitro differentiated cells
3
stem cell
Organ
207
brain
155
liver
123
heart
116
pancreas
74
connective tissue
73
adipose tissue
73
blood vessel
73
vasculature
66
limb
35
nerve
29
musculature of body
28
artery
27
kidney
20
spleen
4
gonad
4
ovary
2
eye
1
lymph node
1
pituitary gland
Project
902
AMP
2
T1D
Genome assembly (visualization)
587
GRCh38
526
hg19
Lab
864
AMP-T2D consortium
40
Patrick T. Ellinor, Broad
Audit category:
27
inconsistent control
inconsistent ontology term
Audit category:
26
missing controlled_by
Audit category:
6
inconsistent control read length
inconsistent assembly
audit.WARNING.category!
inconsistent assembly
audit.ERROR.category!
inconsistent ontology term
BIOSAMPLE
ASSAY
904 results
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Clear Filters
ChIP-seq
tissue
liver
145
islet of Langerhans
71
left cardiac atrium
40
subcutaneous abdominal adipose tissue
36
body of pancreas
35
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