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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
176
DNase-seq
34
ChIP-seq
2
ATAC-seq
Assay category
178
DNA accessibility
34
DNA binding
Target of assay
34
histone
34
histone modification
19
broad histone mark
15
narrow histone mark
Date released
163
June, 2019
25
August, 2017
9
November, 2018
6
November, 2017
4
October, 2017
4
October, 2019
1
March, 2019
Available data
1906
bam
1771
bigWig
1076
tsv
983
bed narrowPeak
560
bigBed narrowPeak
376
fastq
237
tagAlign
212
bed broadPeak
205
bed bed3+
176
bigBed broadPeak
157
txt
64
xls
25
bed bedMethyl
25
bigBed bedMethyl
11
hic
10
bedpe bed3+
6
csv
5
bed bed3
1
bedpe
1
tagAlign bed3+
Organism
207
Homo sapiens
Biosample type
212
tissue
59
cell line
48
primary cell
in vitro differentiated cells
Organ
68
kidney
45
musculature of body
36
brain
36
limb
27
heart
19
pancreas
18
ureter
5
blood vessel
5
vasculature
4
artery
3
adipose tissue
3
connective tissue
3
eye
3
liver
2
nerve
1
spleen
Project
212
AMP
Genome assembly (visualization)
195
hg19
190
GRCh38
Lab
210
AMP-T2D consortium
1
Mark McCarthy, Oxford
1
Stephen Parker, UMich
Audit category:
1
inconsistent ontology term
Audit category:
2
missing controlled_by
Audit category:
inconsistent assembly
audit.WARNING.category!
inconsistent assembly
biosample_type!
in vitro differentiated cells
BIOSAMPLE
ASSAY
212 results
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Clear Filters
DNase-seq
ChIP-seq
ATAC-seq
tissue
heart
18
brain
14
3
muscle of arm
17
kidney
13
muscle of leg
13
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