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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
205
DNase-seq
107
ChIP-seq
2
ATAC-seq
Assay category
207
DNA accessibility
107
DNA binding
Target of assay
63
histone
63
histone modification
49
transcription factor
34
broad histone mark
29
narrow histone mark
9
RNA binding protein
chromatin remodeller
1
other context
1
other post-translational modification
Date released
187
June, 2019
66
November, 2017
37
August, 2017
9
November, 2018
9
October, 2019
4
October, 2017
1
March, 2019
1
November, 2020
Available data
3065
bam
2873
bigWig
1649
bed narrowPeak
1469
tsv
1181
fastq
989
bigBed narrowPeak
356
tagAlign
314
bed broadPeak
278
bigBed broadPeak
247
bed bed3+
158
txt
153
zippedFastqFolder
64
xls
36
bed bedMethyl
36
bigBed bedMethyl
19
hic
16
bedpe bed3+
8
csv
7
bed bed3
4
hdf5
4
tar
3
cool
1
bedpe
1
tagAlign bed3+
1
vcf
Organism
309
Homo sapiens
Biosample type
212
tissue
55
cell line
47
primary cell
in vitro differentiated cells
Organ
78
kidney
59
liver
47
brain
46
musculature of body
36
limb
30
heart
22
epithelium
20
pancreas
18
ureter
17
vasculature
13
blood vessel
9
connective tissue
4
artery
4
eye
4
vein
3
adipose tissue
2
nerve
1
spleen
Project
314
AMP
Genome assembly (visualization)
290
hg19
274
GRCh38
Lab
312
AMP-T2D consortium
1
Mark McCarthy, Oxford
1
Stephen Parker, UMich
Audit category:
4
inconsistent ontology term
Audit category:
2
missing controlled_by
Audit category:
12
inconsistent control read length
inconsistent assembly
audit.WARNING.category!
inconsistent assembly
biosample_type!
in vitro differentiated cells
target.investigated_as!
chromatin remodeller
BIOSAMPLE
ASSAY
314 results
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Clear Filters
DNase-seq
ChIP-seq
ATAC-seq
tissue
heart
18
brain
14
3
muscle of arm
17
kidney
13
muscle of leg
13
+ See 45 more…
cell line
HepG2
54
Panc1
1
primary cell
skeletal muscle myoblast
1
11
endothelial cell of umbilical vein
2
2
astrocyte of the cerebellum
1
2
brain microvascular endothelial cell
1
2
cardiac fibroblast
3
+ See 18 more…
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