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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
34
ChIP-seq
2
ATAC-seq
Assay category
34
DNA binding
2
DNA accessibility
Target of assay
34
histone
34
histone modification
19
broad histone mark
15
narrow histone mark
Date released
25
August, 2017
6
November, 2017
4
October, 2017
1
March, 2019
Available data
3389
bam
3125
bigWig
1774
bed narrowPeak
1600
tsv
1355
fastq
1039
bigBed narrowPeak
396
tagAlign
320
bed broadPeak
bigBed broadPeak
272
bed bed3+
161
txt
153
zippedFastqFolder
64
xls
36
bed bedMethyl
36
bigBed bedMethyl
23
bedpe bed3+
23
hic
12
bed bed3
8
csv
7
bed bedgraph
4
hdf5
4
tar
3
cool
2
ibed
1
bedpe
1
tagAlign bed3+
1
vcf
Organism
31
Homo sapiens
Biosample type
36
tissue
Organ
13
musculature of body
13
pancreas
9
brain
1
adipose tissue
1
connective tissue
Project
36
AMP
Genome assembly (visualization)
35
hg19
14
GRCh38
Lab
34
AMP-T2D consortium
1
Mark McCarthy, Oxford
1
Stephen Parker, UMich
Audit category:
2
missing controlled_by
Audit category:
inconsistent assembly
audit.WARNING.category!
inconsistent assembly
files.file_type!
bigBed broadPeak
BIOSAMPLE
ASSAY
36 results
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Clear Filters
ChIP-seq
ATAC-seq
tissue
skeletal muscle tissue
13
islet of Langerhans
6
2
pancreas
5
brain
3
cingulate gyrus
2
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