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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
84
RNA microarray
59
total RNA-seq
34
ChIP-seq
13
single cell RNA-seq
5
ATAC-seq
1
MPRA
1
snATAC-seq
Assay category
72
Transcription
34
DNA binding
6
DNA accessibility
Target of assay
34
histone
34
histone modification
19
broad histone mark
15
narrow histone mark
Date released
89
February, 2021
57
August, 2021
25
August, 2017
7
February, 2023
7
May, 2022
6
November, 2017
4
October, 2017
1
March, 2019
1
October, 2022
Available data
3389
bam
3165
bigWig
1814
bed narrowPeak
1600
tsv
1355
fastq
1039
bigBed narrowPeak
396
tagAlign
320
bed broadPeak
bigBed broadPeak
272
bed bed3+
161
txt
153
zippedFastqFolder
64
xls
36
bed bedMethyl
36
bigBed bedMethyl
23
bedpe bed3+
23
hic
12
bed bed3
8
csv
7
bed bedgraph
4
hdf5
4
tar
3
cool
2
ibed
1
bedpe
1
tagAlign bed3+
1
vcf
Organism
191
Homo sapiens
Biosample type
193
tissue
3
in vitro differentiated cells
1
cell line
Organ
88
bone element
62
kidney
19
pancreas
14
musculature of body
9
brain
4
skeleton
1
adipose tissue
1
connective tissue
Project
197
AMP
Genome assembly (visualization)
39
hg19
14
GRCh38
Lab
129
AMP-T2D consortium
57
Katalin Susztak, Upenn
6
Kyle Gaulton, UCSD
3
Struan F.A. Grant, CHOP
1
Mark McCarthy, Oxford
1
Stephen Parker, UMich
Audit category:
85
inconsistent ontology term
6
audit script error
Audit category:
2
missing controlled_by
Audit category:
inconsistent assembly
audit.WARNING.category!
inconsistent assembly
files.file_type!
bigBed broadPeak
BIOSAMPLE
ASSAY
197 results
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RNA microarray
total RNA-seq
ChIP-seq
single cell RNA-seq
ATAC-seq
MPRA
snATAC-seq
tissue
bone element
84
kidney
49
13
islet of Langerhans
6
6
2
skeletal muscle tissue
13
1
pancreas
5
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in vitro differentiated cells
Progenitor cell of Hypothalamus (neural progenitor cell)
1
embryonic stem cell
1
neuron cell of Hypothalamus (neuron)
1
cell line
MIN6
1
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