Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
52
single cell RNA-seq
41
ATAC-seq
41
WGBS
34
ChIP-seq
21
snATAC-seq
Assay category
62
DNA accessibility
52
Transcription
41
DNA methylation
34
DNA binding
Target of assay
34
histone
34
histone modification
19
broad histone mark
15
narrow histone mark
Date released
134
May, 2022
25
August, 2017
19
September, 2020
6
November, 2017
4
October, 2017
1
March, 2019
Available data
3389
bam
3165
bigWig
1814
bed narrowPeak
1600
tsv
1355
fastq
1039
bigBed narrowPeak
396
tagAlign
320
bed broadPeak
bigBed broadPeak
272
bed bed3+
161
txt
153
zippedFastqFolder
64
xls
36
bed bedMethyl
36
bigBed bedMethyl
23
bedpe bed3+
23
hic
12
bed bed3
8
csv
7
bed bedgraph
4
hdf5
4
tar
3
cool
2
ibed
1
bedpe
1
tagAlign bed3+
1
vcf
Organism
184
Homo sapiens
Biosample type
153
primary cell
36
tissue
Organ
93
pancreas
80
epithelium
13
musculature of body
9
brain
1
adipose tissue
1
connective tissue
Project
153
HPAP
36
AMP
Genome assembly (visualization)
35
hg19
14
GRCh38
Lab
153
Klaus Kaestner, Upenn
34
AMP-T2D consortium
1
Mark McCarthy, Oxford
1
Stephen Parker, UMich
Audit category:
2
missing controlled_by
Audit category:
inconsistent assembly
audit.WARNING.category!
inconsistent assembly
files.file_type!
bigBed broadPeak
BIOSAMPLE
ASSAY
189 results
search-icon
table-tab-icon
Clear Filters
single cell RNA-seq
ATAC-seq
WGBS
ChIP-seq
snATAC-seq
primary cell
Langerhans cell
52
21
pancreatic alpha cell
22
25
pancreatic beta cell
13
16
pancreatic acinar cell
4
tissue
skeletal muscle tissue
13
islet of Langerhans
2
6
pancreas
5
brain
3
cingulate gyrus
2
+ See 4 more…
See all biosamples
Download