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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
52
single cell RNA-seq
41
WGBS
40
ATAC-seq
21
ChIP-seq
21
snATAC-seq
Assay category
61
DNA accessibility
52
Transcription
41
DNA methylation
21
DNA binding
Target of assay
21
histone
21
histone modification
12
broad histone mark
9
narrow histone mark
Date released
134
May, 2022
20
August, 2017
19
September, 2020
1
November, 2017
1
October, 2017
Available data
bam
3165
bigWig
1814
bed narrowPeak
1600
tsv
1355
fastq
1039
bigBed narrowPeak
396
tagAlign
320
bed broadPeak
284
bigBed broadPeak
272
bed bed3+
161
txt
153
zippedFastqFolder
64
xls
36
bed bedMethyl
36
bigBed bedMethyl
23
bedpe bed3+
23
hic
12
bed bed3
8
csv
7
bed bedgraph
4
hdf5
4
tar
3
cool
2
ibed
1
bedpe
1
tagAlign bed3+
1
vcf
Organism
175
Homo sapiens
Biosample type
153
primary cell
22
tissue
Organ
87
pancreas
80
epithelium
13
musculature of body
1
adipose tissue
1
brain
1
connective tissue
Project
153
HPAP
22
AMP
Genome assembly (visualization)
22
hg19
1
GRCh38
Lab
153
Klaus Kaestner, Upenn
21
AMP-T2D consortium
1
Stephen Parker, UMich
audit.WARNING.category!
inconsistent assembly
files.file_type!
bam
BIOSAMPLE
ASSAY
175 results
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Clear Filters
single cell RNA-seq
WGBS
ATAC-seq
ChIP-seq
snATAC-seq
primary cell
Langerhans cell
52
21
pancreatic alpha cell
25
22
pancreatic beta cell
16
13
pancreatic acinar cell
4
tissue
skeletal muscle tissue
13
islet of Langerhans
1
6
cingulate gyrus
1
subcutaneous abdominal adipose tissue
1
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