Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
197
DNase-seq
111
ChIP-seq
2
ATAC-seq
Assay category
199
DNA accessibility
111
DNA binding
Target of assay
62
histone
62
histone modification
49
transcription factor
34
broad histone mark
28
narrow histone mark
9
RNA binding protein
5
chromatin remodeller
1
other context
1
other post-translational modification
Date released
181
June, 2019
70
November, 2017
37
August, 2017
9
October, 2019
8
November, 2018
4
October, 2017
1
March, 2019
Available data
2796
bam
2595
bigWig
1739
bed narrowPeak
1254
fastq
1122
tsv
1011
bigBed narrowPeak
374
tagAlign
310
bed broadPeak
275
bigBed broadPeak
245
bed bed3+
161
txt
153
zippedFastqFolder
64
xls
33
bed bedMethyl
33
bigBed bedMethyl
23
hic
22
bedpe bed3+
8
csv
6
bed bed3
4
tar
3
bed bedgraph
3
cool
3
hdf5
2
ibed
1
bedpe
1
tagAlign bed3+
1
vcf
Organism
305
Homo sapiens
Biosample type
209
tissue
59
cell line
42
primary cell
Organ
78
kidney
63
liver
47
brain
46
musculature of body
36
limb
30
heart
22
epithelium
20
pancreas
18
ureter
17
vasculature
13
blood vessel
connective tissue
4
artery
4
eye
4
vein
3
adipose tissue
2
nerve
1
spleen
Project
310
AMP
Genome assembly (visualization)
287
hg19
271
GRCh38
Lab
308
AMP-T2D consortium
1
Mark McCarthy, Oxford
1
Stephen Parker, UMich
Audit category:
3
inconsistent ontology term
Audit category:
2
missing controlled_by
Audit category:
13
inconsistent control read length
inconsistent assembly
audit.WARNING.category!
inconsistent assembly
organ_slims!
connective tissue
BIOSAMPLE
ASSAY
310 results
search-icon
table-tab-icon
Clear Filters
DNase-seq
ChIP-seq
ATAC-seq
tissue
heart
18
brain
14
3
muscle of arm
17
kidney
13
muscle of leg
13
+ See 43 more…
cell line
HepG2
58
Panc1
1
primary cell
skeletal muscle myoblast
1
12
endothelial cell of umbilical vein
2
2
astrocyte of the cerebellum
1
2
brain microvascular endothelial cell
1
2
choroid plexus epithelial cell
1
2
+ See 14 more…
See all biosamples
Download