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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
88
DNase-seq
6
ChIP-seq
Assay category
88
DNA accessibility
6
DNA binding
Target of assay
4
histone
4
histone modification
2
RNA binding protein
2
broad histone mark
2
narrow histone mark
2
transcription factor
Date released
84
June, 2019
6
October, 2019
4
November, 2017
Available data
328
bam
315
bed narrowPeak
285
bigWig
186
bigBed narrowPeak
94
bed broadPeak
94
bigBed broadPeak
92
tsv
90
bed bed3+
64
xls
62
txt
6
bed bedMethyl
6
bigBed bedMethyl
6
fastq
6
tagAlign
5
csv
4
hic
2
bedpe bed3+
2
hdf5
1
tar
Organism
94
Homo sapiens
Biosample type
73
tissue
21
primary cell
Organ
78
kidney
63
liver
47
brain
46
musculature of body
36
limb
30
heart
22
epithelium
20
pancreas
18
ureter
17
vasculature
13
blood vessel
10
connective tissue
4
artery
4
eye
4
vein
3
adipose tissue
2
nerve
1
spleen
Project
94
AMP
Genome assembly (visualization)
92
GRCh38
87
hg19
Lab
94
AMP-T2D consortium
Audit category:
2
inconsistent ontology term
audit.WARNING.category!
inconsistent assembly
BIOSAMPLE
ASSAY
94 results
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DNase-seq
ChIP-seq
tissue
kidney
13
renal cortex interstitium
11
renal pelvis
10
right kidney
10
left kidney
9
+ See 7 more…
primary cell
endothelial cell of umbilical vein
2
2
brain microvascular endothelial cell
1
2
choroid plexus epithelial cell
1
2
glomerular visceral epithelial cell
2
kidney tubule cell
2
+ See 7 more…
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