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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
4
Hi-C
3
ChIP-seq
1
FAIRE-seq
Assay category
4
3D chromatin structure
3
DNA binding
1
DNA accessibility
Target of assay
3
transcription factor
1
RNA binding protein
Date released
4
July, 2019
3
November, 2017
1
October, 2019
Available data
3389
bam
3125
bigWig
1774
bed narrowPeak
1600
tsv
1355
fastq
1039
bigBed narrowPeak
396
tagAlign
320
bed broadPeak
284
bigBed broadPeak
272
bed bed3+
161
txt
153
zippedFastqFolder
64
xls
36
bed bedMethyl
36
bigBed bedMethyl
23
bedpe bed3+
23
hic
12
bed bed3
8
csv
7
bed bedgraph
4
hdf5
4
tar
3
cool
2
ibed
1
bedpe
1
tagAlign bed3+
1
vcf
Organism
8
Homo sapiens
Biosample type
5
primary cell
3
cell line
Organ
4
liver
3
blood vessel
3
brain
3
epithelium
3
vasculature
1
connective tissue
1
vein
Project
8
AMP
Genome assembly (visualization)
8
hg19
Lab
8
AMP-T2D consortium
Audit category:
inconsistent assembly
audit.WARNING.category!
inconsistent assembly
BIOSAMPLE
ASSAY
8 results
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Hi-C
ChIP-seq
FAIRE-seq
primary cell
astrocyte of the cerebellum
1
brain microvascular endothelial cell
1
brain pericyte
1
endothelial cell of hepatic sinusoid
1
endothelial cell of umbilical vein
1
cell line
HepG2
3
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