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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
172
ChIP-seq
125
total RNA-seq
35
ATAC-seq
18
snATAC-seq
17
pCHi-C
5
STARR-seq
3
CRISPR genome editing followed by DNA sequencing
3
Hi-C
2
HiChIP
1
whole genome sequencing assay
Assay category
172
DNA binding
125
Transcription
53
DNA accessibility
3
3D chromatin structure
1
DNA sequencing
Target of assay
137
histone
137
histone modification
75
broad histone mark
62
narrow histone mark
23
transcription factor
12
control
6
RNA binding protein
Date released
235
May, 2021
45
May, 2020
36
August, 2021
24
May, 2022
23
February, 2023
16
January, 2021
2
March, 2019
Available data
234
bigWig
204
bam
146
bed narrowPeak
106
tsv
84
tagAlign
24
fastq
6
txt
2
bed bed3+
2
bedpe bed3+
2
hic
1
bedpe
1
vcf
Organism
381
Homo sapiens
Biosample type
239
primary cell
56
tissue
47
in vitro differentiated cells
39
cell line
Organ
55
pancreas
31
liver
8
blood
8
bodily fluid
2
kidney
1
bone element
1
bone marrow
1
connective tissue
1
thymus
Project
236
T1D
145
AMP
Genome assembly (visualization)
255
hg19
181
GRCh38
Lab
3873
AMP-T2D consortium
343
Kyle Gaulton, UCSD
324
Klaus Kaestner, Upenn
142
Katalin Susztak, Upenn
47
KPMP
40
Karen Mohlke, UNC
40
Patrick T. Ellinor, Broad
38
Bing Ren, UCSD
19
Xin Sun, UCSD
10
Rohit N. Kulkarni, M.D., Ph.D.
7
Struan F.A. Grant, CHOP
4
Anna Gloyn, Oxford
2
Mark McCarthy, Oxford
1
ITG
1
Maike Sander, UCSD
1
Stephen Parker, UMich
Audit category:
6
inconsistent ontology term
audit.WARNING.category!
inconsistent assembly
month_released!
December, 2018
BIOSAMPLE
ASSAY
381 results
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ChIP-seq
total RNA-seq
ATAC-seq
snATAC-seq
pCHi-C
STARR-seq
CRISPR genome editing followed by DNA sequencing
Hi-C
HiChIP
whole genome sequencing assay
primary cell
monocyte
84
53
1
CD8-positive, alpha-beta T cell
33
4
1
peripheral blood mononuclear cell
8
B cell
2
1
naive B cel
2
1
+ See 31 more…
tissue
islet of Langerhans
12
30
6
2
pancreas
1
4
thymus
1
in vitro differentiated cells
embryonic stem cell
37
5
5
cell line
HepG2
18
9
2
1
1
EndoC_BH1
3
2
HEK293T
2
Synthesized DNA
1
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