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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
180
ChIP-seq
168
ATAC-seq
127
total RNA-seq
59
single cell RNA-seq
41
WGBS
30
DNase-seq
29
snATAC-seq
17
pCHi-C
10
Hi-C
9
RRBS
2
small RNA-seq
1
DNAme array
1
FAIRE-seq
Assay category
228
DNA accessibility
188
Transcription
180
DNA binding
51
DNA methylation
10
3D chromatin structure
Target of assay
161
histone
161
histone modification
87
broad histone mark
74
narrow histone mark
18
control
4
RNA binding protein
4
transcription factor
Date released
206
May, 2021
147
May, 2020
134
May, 2022
55
June, 2019
34
October, 2019
31
July, 2019
18
September, 2020
12
February, 2023
8
January, 2021
6
November, 2020
5
April, 2018
5
December, 2019
May, 2019
4
August, 2021
3
February, 2021
3
October, 2022
1
August, 2017
1
March, 2020
1
March, 2023
Available data
607
bigWig
602
bam
fastq
289
bed narrowPeak
270
tsv
153
zippedFastqFolder
103
bigBed narrowPeak
99
tagAlign
48
bed broadPeak
48
bigBed broadPeak
37
bed bed3+
10
bed bedMethyl
10
bigBed bedMethyl
6
hic
4
bedpe bed3+
4
hdf5
3
cool
2
csv
1
bed bed3
1
tar
Organism
674
Homo sapiens
Biosample type
2285
tissue
674
primary cell
253
in vitro differentiated cells
234
cell line
6
stem cell
Organ
163
epithelium
88
pancreas
36
connective tissue
31
kidney
31
vasculature
28
blood vessel
22
vein
14
liver
14
musculature of body
13
heart
12
brain
8
blood
8
bodily fluid
5
eye
2
adipose tissue
2
artery
1
bone element
1
bone marrow
1
pericardium
Project
314
AMP
204
T1D
155
HPAP
1
ITG
Genome assembly (visualization)
398
hg19
303
GRCh38
Lab
279
AMP-T2D consortium
239
Kyle Gaulton, UCSD
155
Klaus Kaestner, Upenn
1
ITG
Audit category:
44
inconsistent ontology term
4
audit script error
audit.WARNING.category!
inconsistent assembly
month_released!
May, 2019
files.file_type!
fastq
BIOSAMPLE
ASSAY
674 results
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ChIP-seq
ATAC-seq
total RNA-seq
single cell RNA-seq
WGBS
DNase-seq
snATAC-seq
pCHi-C
Hi-C
RRBS
small RNA-seq
DNAme array
FAIRE-seq
primary cell
monocyte
85
15
54
1
1
Langerhans cell
51
21
pancreatic alpha cell
22
25
1
CD8-positive, alpha-beta T cell
33
2
4
1
pancreatic beta cell
13
16
1
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