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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
56
total RNA-seq
49
ChIP-seq
46
ATAC-seq
5
DNase-seq
2
WGBS
2
single cell RNA-seq
1
pCHi-C
Assay category
58
Transcription
51
DNA accessibility
49
DNA binding
2
DNA methylation
Target of assay
24
histone
24
histone modification
18
broad histone mark
15
control
10
transcription factor
6
narrow histone mark
3
other context
3
other post-translational modification
Date released
66
February, 2021
35
February, 2023
26
October, 2019
9
November, 2018
7
December, 2018
7
January, 2019
May, 2019
3
July, 2019
2
August, 2021
2
February, 2020
2
June, 2019
1
March, 2020
1
October, 2017
Available data
121
bam
98
bigWig
85
bed narrowPeak
59
tsv
35
bigBed narrowPeak
24
fastq
6
tagAlign
5
bed bed3+
5
bed broadPeak
5
bigBed broadPeak
2
bed bedMethyl
2
bigBed bedMethyl
Organism
161
Homo sapiens
Biosample type
93
tissue
66
cell line
2
primary cell
Organ
942
pancreas
791
liver
684
connective tissue
519
epithelium
491
adipose tissue
372
heart
349
kidney
258
brain
186
vasculature
180
blood vessel
159
bone element
136
artery
115
limb
89
musculature of body
69
blood
69
bodily fluid
61
eye
43
nerve
37
embryo
25
spleen
22
vein
20
lung
18
ureter
16
skeleton
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
161
AMP
Genome assembly (visualization)
141
GRCh38
104
hg19
Lab
161
AMP-T2D consortium
audit.WARNING.category!
inconsistent assembly
month_released!
May, 2019
BIOSAMPLE
ASSAY
161 results
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total RNA-seq
ChIP-seq
ATAC-seq
DNase-seq
WGBS
single cell RNA-seq
pCHi-C
tissue
coronary artery
1
36
2
tibial artery
1
23
1
2
spleen
20
1
1
2
1
pulmonary artery
2
cell line
smooth muscle cell of the coronary artery
52
6
8
primary cell
endothelial cell of coronary artery
1
smooth muscle cell of the coronary artery
1
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