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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
245
ChIP-seq
220
total RNA-seq
186
ATAC-seq
186
single cell RNA-seq
56
snATAC-seq
47
WGBS
31
DNase-seq
17
pCHi-C
10
Hi-C
10
RRBS
1
DNAme array
1
FAIRE-seq
1
small RNA-seq
Assay category
407
Transcription
274
DNA accessibility
245
DNA binding
58
DNA methylation
10
3D chromatin structure
Target of assay
203
histone
203
histone modification
104
broad histone mark
99
narrow histone mark
35
control
10
RNA binding protein
10
transcription factor
1
chromatin remodeller
Date released
206
May, 2021
147
May, 2020
134
May, 2022
88
February, 2023
September, 2018
59
September, 2020
57
August, 2017
55
June, 2019
48
February, 2021
48
July, 2018
43
April, 2018
34
October, 2019
29
July, 2019
9
November, 2017
8
January, 2021
7
August, 2020
6
November, 2020
5
December, 2019
5
May, 2019
5
September, 2017
4
August, 2021
3
August, 2018
3
June, 2018
3
October, 2022
2
October, 2018
1
March, 2020
1
March, 2023
1
November, 2018
Available data
537
bigWig
533
bam
334
fastq
247
bed narrowPeak
242
tsv
153
zippedFastqFolder
99
tagAlign
93
bigBed narrowPeak
48
bed broadPeak
48
bigBed broadPeak
37
bed bed3+
10
bed bedMethyl
10
bigBed bedMethyl
6
hic
4
bedpe bed3+
4
hdf5
3
cool
1
bed bed3
1
csv
1
tar
Organism
1011
Homo sapiens
Biosample type
2288
tissue
1011
primary cell
661
cell line
393
in vitro differentiated cells
10
stem cell
Organ
345
epithelium
274
pancreas
39
connective tissue
37
vasculature
36
kidney
31
blood vessel
22
vein
21
brain
14
liver
14
musculature of body
13
heart
8
blood
8
bodily fluid
5
eye
adipose tissue
2
artery
1
bone element
1
bone marrow
1
pericardium
Project
482
AMP
324
HPAP
204
T1D
1
ITG
Genome assembly (visualization)
552
hg19
460
GRCh38
Lab
447
AMP-T2D consortium
324
Klaus Kaestner, Upenn
239
Kyle Gaulton, UCSD
1
ITG
Audit category:
54
inconsistent ontology term
31
audit script error
Audit category:
12
missing controlled_by
Audit category:
5
inconsistent control read length
inconsistent assembly
1
inconsistent control run_type
audit.WARNING.category!
inconsistent assembly
month_released!
September, 2018
organ_slims!
adipose tissue
BIOSAMPLE
ASSAY
1011 results
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ChIP-seq
total RNA-seq
ATAC-seq
single cell RNA-seq
snATAC-seq
WGBS
DNase-seq
pCHi-C
Hi-C
RRBS
DNAme array
FAIRE-seq
small RNA-seq
primary cell
monocyte
85
54
15
1
1
Langerhans cell
85
48
pancreatic alpha cell
13
42
32
12
31
1
pancreatic beta cell
13
11
19
12
16
1
CD8-positive, alpha-beta T cell
33
4
2
1
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