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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
6
ChIP-seq
1
CRISPR RNA-seq
1
CRISPR genome editing followed by sgRNA sequencing
1
CRISPRi RNA-seq
1
MPRA
1
RNA microarray
1
shRNA RNA-seq
1
siRNA RNA-seq
1
snATAC-seq
Assay category
6
DNA binding
4
Transcription
1
DNA accessibility
Target of assay
5
histone
5
histone modification
3
broad histone mark
2
narrow histone mark
1
control
Date released
6
August, 2017
4
March, 2023
1
April, 2020
1
August, 2021
1
February, 2023
1
October, 2022
Available data
6
bam
6
fastq
6
tagAlign
5
bed broadPeak
5
bed narrowPeak
5
bigBed narrowPeak
5
bigWig
1
txt
Organism
Homo sapiens
Biosample type
8
tissue
4
cell line
2
stem cell
Organ
7
pancreas
1
adipose tissue
1
connective tissue
1
epithelium
1
lung
Project
9
AMP
4
community
1
LungMap
Genome assembly (visualization)
5
GRCh38
5
hg19
Lab
9
AMP-T2D consortium
4
Anna Gloyn, Oxford
1
Xin Sun, UCSD
Audit category:
inconsistent assembly
audit.WARNING.category!
inconsistent assembly
month_released!
September, 2018
replicates.library.biosample.donor.organism.scientific_name!
Homo sapiens
BIOSAMPLE
ASSAY
14 results
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ChIP-seq
CRISPR RNA-seq
CRISPR genome editing followed by sgRNA sequencing
CRISPRi RNA-seq
MPRA
RNA microarray
shRNA RNA-seq
siRNA RNA-seq
snATAC-seq
tissue
pancreas
6
lung
1
subcutaneous adipose tissue
1
cell line
EndoC-BH1
1
1
EndoC_BH1
1
MIN6
1
stem cell
SB Ad3.1
1
1
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