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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
29
ChIP-seq
5
ATAC-seq
4
DNase-seq
1
FAIRE-seq
Assay category
29
DNA binding
10
DNA accessibility
Target of assay
27
histone
27
histone modification
16
broad histone mark
11
narrow histone mark
2
RNA binding protein
2
transcription factor
1
chromatin remodeller
Date released
312
November, 2017
210
June, 2019
97
May, 2019
73
November, 2018
70
October, 2019
64
April, 2019
50
December, 2017
45
October, 2018
39
August, 2017
30
December, 2018
21
January, 2019
14
September, 2018
6
October, 2017
5
September, 2017
2
July, 2019
1
November, 2020
Available data
284
fastq
279
bam
269
bigWig
139
bed narrowPeak
89
tsv
83
tagAlign
39
bed broadPeak
39
bigBed narrowPeak
33
bed bed3+
14
bigBed broadPeak
6
bed bedMethyl
6
bigBed bedMethyl
Organism
34
Homo sapiens
Biosample type
21
tissue
17
primary cell
1
in vitro differentiated cells
Organ
16
pancreas
6
liver
3
connective tissue
3
epithelium
2
adipose tissue
Project
39
AMP
Genome assembly (visualization)
39
hg19
35
GRCh38
Lab
39
AMP-T2D consortium
Audit category:
6
inconsistent control read length
inconsistent assembly
1
inconsistent control run_type
audit.WARNING.category!
inconsistent assembly
BIOSAMPLE
ASSAY
39 results
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ChIP-seq
ATAC-seq
DNase-seq
FAIRE-seq
tissue
pancreas
11
liver
5
islet of Langerhans
1
1
adipose tissue
1
right lobe of liver
1
+ See 1 more…
primary cell
skeletal muscle myoblast
12
2
pancreatic acinar cell
1
pancreatic alpha cell
1
pancreatic beta cell
1
in vitro differentiated cells
adipocyte
1
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