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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
353
ChIP-seq
104
total RNA-seq
12
ATAC-seq
2
DNase-seq
2
Hi-C
1
pCHi-C
Assay category
353
DNA binding
104
Transcription
14
DNA accessibility
2
3D chromatin structure
Target of assay
301
transcription factor
85
recombinant protein
52
RNA binding protein
36
histone
36
histone modification
20
chromatin remodeller
18
broad histone mark
18
narrow histone mark
13
control
2
other context
2
other post-translational modification
Date released
266
November, 2017
93
February, 2021
42
November, 2018
23
August, 2021
19
October, 2019
14
November, 2019
7
March, 2020
5
January, 2019
5
May, 2021
Available data
461
bigWig
455
bam
346
bed narrowPeak
313
fastq
297
bigBed narrowPeak
105
tsv
59
bed broadPeak
59
bigBed broadPeak
17
tagAlign
3
tar
2
bed bed3+
2
bedpe bed3+
2
hic
1
bed bed3
Organism
474
Homo sapiens
Biosample type
1754
tissue
626
primary cell
474
cell line
297
in vitro differentiated cells
3
stem cell
Organ
330
liver
64
artery
64
blood vessel
64
heart
64
vasculature
57
pancreas
blood
55
bodily fluid
52
epithelium
12
kidney
8
embryo
Project
470
AMP
4
T1D
Genome assembly (visualization)
474
hg19
409
GRCh38
Lab
459
AMP-T2D consortium
15
Bing Ren, UCSD
Audit category:
60
inconsistent ontology term
1
inconsistent replicate
Audit category:
12
missing controlled_by
Audit category:
26
inconsistent control read length
8
inconsistent control run_type
inconsistent assembly
audit.WARNING.category!
inconsistent assembly
organ_slims!
blood
BIOSAMPLE
ASSAY
474 results
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ChIP-seq
total RNA-seq
ATAC-seq
DNase-seq
Hi-C
pCHi-C
cell line
HepG2
322
5
1
1
1
smooth muscle cell of the coronary artery
4
52
8
EndoC_BH1
13
33
3
1
H1-hESC
8
Panc1
6
1
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