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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
190
DNase-seq
72
ChIP-seq
Assay category
190
DNA accessibility
72
DNA binding
Target of assay
47
transcription factor
25
histone
25
histone modification
13
broad histone mark
12
narrow histone mark
7
RNA binding protein
5
chromatin remodeller
1
other context
1
other post-translational modification
Date released
173
June, 2019
60
November, 2017
14
August, 2017
9
November, 2018
5
October, 2019
1
November, 2020
Available data
3070
bam
2862
bigWig
1663
bed narrowPeak
1442
tsv
1096
fastq
963
bigBed narrowPeak
389
tagAlign
298
bed broadPeak
262
bigBed broadPeak
251
bed bed3+
161
txt
73
zippedFastqFolder
64
xls
30
bed bedMethyl
30
bigBed bedMethyl
18
bedpe bed3+
17
hic
12
bed bed3
8
csv
7
bed bedgraph
3
tar
2
hdf5
2
ibed
1
bedpe
1
tagAlign bed3+
1
vcf
Organism
262
Homo sapiens
Biosample type
176
tissue
59
cell line
26
primary cell
1
in vitro differentiated cells
Organ
78
kidney
63
liver
38
brain
36
limb
33
musculature of body
30
heart
epithelium
18
ureter
17
vasculature
13
blood vessel
9
connective tissue
7
pancreas
4
artery
4
eye
4
vein
2
adipose tissue
2
nerve
1
spleen
Project
262
AMP
Genome assembly (visualization)
246
GRCh38
245
hg19
Lab
262
AMP-T2D consortium
Audit category:
3
inconsistent ontology term
Audit category:
13
inconsistent control read length
inconsistent assembly
audit.WARNING.category!
inconsistent assembly
organ_slims!
epithelium
month_released!
June, 2018
BIOSAMPLE
ASSAY
262 results
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DNase-seq
ChIP-seq
tissue
heart
18
muscle of arm
17
brain
14
kidney
13
muscle of leg
13
+ See 39 more…
cell line
HepG2
58
Panc1
1
primary cell
skeletal muscle myoblast
1
12
astrocyte of the cerebellum
1
2
cardiac fibroblast
3
astrocyte of the hippocampus
1
brain pericyte
1
+ See 5 more…
in vitro differentiated cells
adipocyte
1
See all biosamples
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