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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
83
total RNA-seq
43
ChIP-seq
5
ATAC-seq
Assay category
83
Transcription
43
DNA binding
5
DNA accessibility
Target of assay
21
histone
21
histone modification
16
transcription factor
11
narrow histone mark
10
broad histone mark
6
control
5
RNA binding protein
Date released
131
May, 2021
68
August, 2017
43
December, 2017
42
August, 2021
39
February, 2018
26
February, 2021
16
February, 2023
8
March, 2020
8
October, 2019
5
November, 2019
4
January, 2018
2
December, 2019
1
August, 2018
Available data
88
bigWig
84
bam
78
tsv
6
tagAlign
5
bed narrowPeak
Organism
131
Homo sapiens
Biosample type
206
primary cell
131
in vitro differentiated cells
38
tissue
21
cell line
Organ
5
epithelium
3
pancreas
2
embryo
1
connective tissue
heart
Project
131
AMP
Genome assembly (visualization)
88
hg19
83
GRCh38
Lab
84
AMP-T2D consortium
47
Kyle Gaulton, UCSD
Audit category:
68
inconsistent ontology term
audit.WARNING.category!
inconsistent assembly
organ_slims!
heart
BIOSAMPLE
ASSAY
131 results
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total RNA-seq
ChIP-seq
ATAC-seq
in vitro differentiated cells
cardiomyocytes
59
3
embryonic stem cell
5
37
5
induced pluripotent stem cell
9
pancreatic PP cell
3
cardiomyocytes (cardiac muscle cell)
1
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