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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
189
ChIP-seq
136
total RNA-seq
42
ATAC-seq
5
pCHi-C
4
GRO-seq
4
Hi-C
2
Capture-C
2
single cell RNA-seq
1
DNase-seq
Assay category
189
DNA binding
138
Transcription
43
DNA accessibility
4
3D chromatin structure
Target of assay
110
histone
110
histone modification
56
broad histone mark
53
narrow histone mark
43
transcription factor
36
control
11
RNA binding protein
3
chromatin remodeller
Date released
129
May, 2021
63
August, 2017
42
August, 2021
42
December, 2017
39
February, 2018
26
February, 2021
16
February, 2023
8
March, 2020
8
October, 2019
5
November, 2019
4
January, 2018
2
December, 2019
1
August, 2018
Available data
282
bam
252
bigWig
135
fastq
131
tsv
130
bed narrowPeak
37
tagAlign
25
bed bed3+
17
bigBed narrowPeak
7
bed bedgraph
7
bedpe bed3+
5
bed bed3
4
hic
3
txt
2
ibed
1
bed broadPeak
1
bigBed broadPeak
Organism
385
Homo sapiens
Biosample type
2256
tissue
740
primary cell
557
cell line
385
in vitro differentiated cells
10
stem cell
Organ
92
connective tissue
28
embryo
24
epithelium
15
liver
pancreas
1
adipose tissue
1
heart
Project
385
AMP
Genome assembly (visualization)
290
hg19
258
GRCh38
4
hg18
Lab
331
AMP-T2D consortium
47
Kyle Gaulton, UCSD
7
Struan F.A. Grant, CHOP
Audit category:
115
inconsistent ontology term
2
audit script error
Audit category:
missing controlled_by
Audit category:
17
inconsistent control read length
audit.WARNING.category!
inconsistent assembly
organ_slims!
pancreas
audit.NOT_COMPLIANT.category!
missing controlled_by
BIOSAMPLE
ASSAY
385 results
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ChIP-seq
total RNA-seq
ATAC-seq
pCHi-C
GRO-seq
Hi-C
Capture-C
single cell RNA-seq
DNase-seq
in vitro differentiated cells
adipocyte
62
5
8
1
1
cardiomyocytes
3
59
embryonic stem cell
40
7
6
1
neural progenitor cell
21
7
10
pancreatic endoderm
17
4
1
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