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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
71
ChIP-seq
Assay category
71
DNA binding
Target of assay
319
histone
histone modification
174
narrow histone mark
145
broad histone mark
66
control
5
transcription factor
Date released
23
May, 2020
11
August, 2017
11
November, 2017
9
October, 2019
8
August, 2021
5
May, 2021
2
February, 2021
2
October, 2017
Available data
2493
bam
2212
bigWig
1531
tsv
1124
fastq
899
bed narrowPeak
634
bigBed narrowPeak
244
bed broadPeak
242
bigBed broadPeak
234
bed bed3+
161
txt
153
zippedFastqFolder
71
tagAlign
64
xls
34
bed bedMethyl
34
bigBed bedMethyl
21
bedpe bed3+
20
hic
12
bed bed3
8
csv
7
bed bedgraph
3
cool
3
tar
2
hdf5
2
ibed
1
bedpe
1
vcf
Organism
70
Homo sapiens
Biosample type
52
tissue
14
in vitro differentiated cells
3
cell line
2
primary cell
Organ
28
liver
19
brain
6
artery
6
blood vessel
6
heart
vasculature
4
pancreas
3
connective tissue
3
epithelium
2
musculature of body
1
adipose tissue
Project
71
AMP
Genome assembly (visualization)
7
hg19
5
GRCh38
Lab
71
AMP-T2D consortium
Audit category:
3
inconsistent ontology term
audit.WARNING.category!
inconsistent assembly
organ_slims!
spinal cord
vasculature
target.investigated_as!
histone modification
BIOSAMPLE
ASSAY
71 results
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ChIP-seq
tissue
liver
26
brain
2
caudate nucleus
2
cingulate gyrus
2
layer of hippocampus
2
+ See 15 more…
in vitro differentiated cells
neural progenitor cell
7
cardiomyocytes
3
adipocyte
2
pancreatic PP cell
2
cell line
iPSC derived cell line
2
HepG2
1
primary cell
hepatocyte
1
skeletal muscle myoblast
1
See all biosamples
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