Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
22
ChIP-seq
10
total RNA-seq
2
Hi-C
2
STARR-seq
1
pCHi-C
1
whole genome sequencing assay
Assay category
22
DNA binding
10
Transcription
2
3D chromatin structure
1
DNA sequencing
Target of assay
11
transcription factor
6
histone
6
histone modification
5
control
4
narrow histone mark
2
broad histone mark
1
RNA binding protein
Date released
315
November, 2017
194
May, 2020
63
December, 2017
54
August, 2017
53
November, 2018
40
May, 2022
35
August, 2021
10
July, 2019
7
October, 2019
5
December, 2019
5
January, 2019
3
February, 2021
3
March, 2020
2
June, 2019
1
December, 2018
1
February, 2020
Available data
18
bigWig
17
bed narrowPeak
11
tsv
5
bam
4
tagAlign
3
bed bed3+
2
bedpe bed3+
2
hic
1
vcf
Organism
38
Homo sapiens
Biosample type
31
cell line
4
primary cell
3
tissue
Organ
132
kidney
99
heart
38
liver
18
pancreas
12
epithelium
10
blood vessel
10
vasculature
8
embryo
7
connective tissue
5
musculature of body
2
adipose tissue
2
artery
2
brain
2
intestine
1
adrenal gland
1
esophagus
1
gonad
1
large intestine
1
lung
1
mammary gland
1
ovary
1
small intestine
1
spleen
1
stomach
1
thymus
1
urinary bladder
1
vein
Project
38
AMP
Genome assembly (visualization)
20
hg19
4
GRCh38
Lab
31
Bing Ren, UCSD
7
AMP-T2D consortium
audit.WARNING.category!
inconsistent assembly
BIOSAMPLE
ASSAY
38 results
search-icon
table-tab-icon
Clear Filters
ChIP-seq
total RNA-seq
Hi-C
STARR-seq
pCHi-C
whole genome sequencing assay
cell line
HepG2
18
9
1
2
1
primary cell
hepatocyte
4
tissue
liver
1
1
1
Download