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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
403
total RNA-seq
217
ChIP-seq
152
ATAC-seq
74
single cell RNA-seq
51
WGBS
11
snATAC-seq
10
MeRIP-seq
8
DNase-seq
8
Hi-C
2
Capture-C
2
FAIRE-seq
2
RRBS
2
small RNA-seq
1
CRISPR genome editing followed by sgRNA sequencing
1
pCHi-C
Assay category
403
Transcription
Date released
120
July, 2018
89
August, 2017
42
February, 2023
41
May, 2021
26
February, 2021
26
September, 2018
20
November, 2019
16
September, 2020
6
April, 2018
6
May, 2022
5
March, 2020
2
July, 2019
2
October, 2018
1
August, 2021
1
February, 2020
Available data
336
bam
332
tsv
330
bigWig
184
fastq
6
txt
Organism
403
Homo sapiens
Biosample type
289
tissue
81
primary cell
33
cell line
Organ
474
connective tissue
403
pancreas
398
adipose tissue
189
liver
131
epithelium
72
heart
62
bone element
61
blood vessel
61
vasculature
60
kidney
56
artery
19
eye
17
brain
14
embryo
7
limb
6
musculature of body
5
nerve
4
skeleton
1
pericardium
1
spinal cord
Project
341
AMP
53
HPAP
9
T1D
Genome assembly (visualization)
330
GRCh38
330
hg19
Lab
337
AMP-T2D consortium
53
Klaus Kaestner, Upenn
12
Kyle Gaulton, UCSD
1
Bing Ren, UCSD
Audit category:
33
inconsistent ontology term
audit.WARNING.category!
inconsistent assembly
BIOSAMPLE
ASSAY
403 results
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Clear Filters
total RNA-seq
tissue
islet of Langerhans
284
body of pancreas
3
pancreas
2
primary cell
pancreatic alpha cell
52
pancreatic beta cell
21
pancreatic acinar cell
4
pancreatic ductal cell
4
cell line
EndoC_BH1
33
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