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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
1031
total RNA-seq
901
ChIP-seq
180
single cell RNA-seq
87
RNA microarray
27
WGBS
25
pCHi-C
16
small RNA-seq
11
RRBS
4
MeRIP-seq
3
snDrop-seq
Assay category
1227
Transcription
901
DNA binding
DNA accessibility
38
DNA methylation
3D chromatin structure
Target of assay
622
histone modification
621
histone
321
narrow histone mark
300
broad histone mark
187
control
94
transcription factor
28
RNA binding protein
3
other context
3
other post-translational modification
2
chromatin remodeller
2
nucleotide modification
Date released
537
February, 2021
274
August, 2017
221
October, 2019
193
May, 2020
157
August, 2021
120
July, 2018
115
May, 2019
82
November, 2017
80
April, 2019
73
October, 2018
65
July, 2019
48
December, 2017
47
September, 2023
40
May, 2021
40
May, 2024
31
March, 2020
27
May, 2022
25
February, 2020
19
November, 2019
16
November, 2018
15
October, 2017
14
February, 2023
9
April, 2020
7
December, 2018
7
January, 2019
6
April, 2018
6
September, 2017
4
May, 2023
4
November, 2020
3
December, 2019
Available data
1656
bam
1542
bigWig
1075
tsv
589
bed narrowPeak
371
bigBed narrowPeak
330
fastq
238
tagAlign
156
txt
35
bed broadPeak
28
bed bed3+
25
bed bedMethyl
25
bigBed bedMethyl
6
csv
1
tagAlign bed3+
Organism
2277
Homo sapiens
Biosample type
2285
tissue
785
primary cell
601
cell line
330
in vitro differentiated cells
8
stem cell
Organ
539
connective tissue
480
adipose tissue
414
pancreas
334
liver
244
heart
233
brain
148
kidney
146
bone element
89
blood vessel
89
vasculature
74
limb
42
musculature of body
40
nerve
32
artery
25
eye
23
spleen
10
lung
5
gonad
5
ovary
4
skeleton
3
epithelium
2
intestine
2
thymus
1
adrenal gland
1
esophagus
1
large intestine
1
lymph node
1
pericardium
1
pituitary gland
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
2219
AMP
47
KPMP
10
T1D
9
LungMap
Genome assembly (visualization)
1518
GRCh38
1450
hg19
Lab
2091
AMP-T2D consortium
60
Katalin Susztak, Upenn
47
KPMP
40
Patrick T. Ellinor, Broad
20
Karen Mohlke, UNC
13
Kyle Gaulton, UCSD
9
Xin Sun, UCSD
4
Rohit N. Kulkarni, M.D., Ph.D.
1
Bing Ren, UCSD
Audit category:
89
inconsistent ontology term
27
inconsistent control
7
audit script error
Audit category:
26
missing controlled_by
Audit category:
inconsistent control read length
1
inconsistent assembly
audit.WARNING.category!
inconsistent control read length
assay_slims!
DNA accessibility
3D chromatin structure
BIOSAMPLE
ASSAY
2285 results
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total RNA-seq
ChIP-seq
single cell RNA-seq
RNA microarray
WGBS
pCHi-C
small RNA-seq
RRBS
MeRIP-seq
snDrop-seq
tissue
adipose tissue
382
2
3
1
islet of Langerhans
292
71
6
4
1
4
liver
167
144
1
3
1
1
1
kidney
49
27
64
1
bone element
84
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