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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
59
ChIP-seq
Assay category
59
DNA binding
Target of assay
54
histone
54
histone modification
30
transcription factor
29
narrow histone mark
broad histone mark
1
RNA binding protein
1
chromatin remodeller
1
recombinant protein
Date released
34
August, 2017
15
September, 2018
7
November, 2017
1
December, 2017
1
November, 2018
1
October, 2017
Available data
59
bam
59
fastq
57
bigWig
24
bed narrowPeak
13
bed bed3+
8
bigBed narrowPeak
1
bed broadPeak
1
tagAlign
Organism
59
Homo sapiens
Biosample type
23
primary cell
22
tissue
8
cell line
6
in vitro differentiated cells
Organ
32
pancreas
17
connective tissue
12
adipose tissue
11
epithelium
8
liver
1
brain
1
embryo
Project
59
AMP
Genome assembly (visualization)
57
hg19
51
GRCh38
Lab
59
AMP-T2D consortium
Audit category:
59
missing controlled_by
Audit category:
6
inconsistent control run_type
inconsistent control read length
audit.WARNING.category!
inconsistent control read length
assay_slims!
DNA sequencing
target.investigated_as!
broad histone mark
BIOSAMPLE
ASSAY
59 results
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Clear Filters
ChIP-seq
primary cell
pancreatic endocrine cell
12
pancreatic ductal cell
7
pancreatic acinar cell
4
tissue
white adipose tissue
12
islet of Langerhans
9
brain
1
cell line
HepG2
8
in vitro differentiated cells
adipocyte
5
pancreatic endoderm
1
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