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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
861
ChIP-seq
Assay category
1227
Transcription
861
DNA binding
470
DNA accessibility
38
DNA methylation
16
3D chromatin structure
Target of assay
587
histone modification
586
histone
306
narrow histone mark
280
broad histone mark
185
control
89
transcription factor
23
RNA binding protein
3
other context
3
other post-translational modification
2
chromatin remodeller
Date released
195
October, 2019
171
August, 2017
115
May, 2019
82
November, 2017
80
April, 2019
73
October, 2018
50
May, 2020
48
December, 2017
15
October, 2017
10
November, 2018
7
December, 2018
7
January, 2019
6
September, 2017
2
March, 2020
Available data
716
bam
569
bigWig
549
bed narrowPeak
371
bigBed narrowPeak
238
tagAlign
214
fastq
35
bed broadPeak
28
bed bed3+
1
tagAlign bed3+
Organism
854
Homo sapiens
Biosample type
861
tissue
458
cell line
274
primary cell
181
in vitro differentiated cells
1
stem cell
Organ
209
brain
154
liver
112
pancreas
83
heart
74
connective tissue
73
adipose tissue
73
blood vessel
73
vasculature
66
limb
35
nerve
29
musculature of body
28
artery
27
kidney
20
spleen
4
gonad
4
ovary
2
eye
1
lymph node
1
pituitary gland
Project
859
AMP
2
T1D
Genome assembly (visualization)
544
GRCh38
523
hg19
Lab
861
AMP-T2D consortium
Audit category:
27
inconsistent control
2
inconsistent ontology term
Audit category:
26
missing controlled_by
Audit category:
inconsistent control read length
1
inconsistent assembly
audit.WARNING.category!
inconsistent control read length
BIOSAMPLE
ASSAY
861 results
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Clear Filters
ChIP-seq
tissue
liver
144
islet of Langerhans
71
subcutaneous abdominal adipose tissue
36
heart left ventricle
35
tibial nerve
35
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