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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
218
ChIP-seq
32
DNase-seq
17
total RNA-seq
4
ATAC-seq
4
small RNA-seq
3
Hi-C
3
single cell RNA-seq
2
RRBS
2
pCHi-C
1
FAIRE-seq
Assay category
218
DNA binding
17
Transcription
Target of assay
187
histone
187
histone modification
117
narrow histone mark
70
broad histone mark
28
control
3
RNA binding protein
3
transcription factor
Date released
91
November, 2017
85
October, 2019
28
May, 2019
15
October, 2017
12
February, 2020
4
July, 2019
Available data
201
bam
177
bigWig
170
bed narrowPeak
118
tagAlign
94
bigBed narrowPeak
18
fastq
17
tsv
15
bed broadPeak
6
bigBed broadPeak
1
tagAlign bed3+
Organism
235
Homo sapiens
Biosample type
226
tissue
9
primary cell
Organ
714
liver
621
connective tissue
606
pancreas
471
adipose tissue
255
epithelium
235
brain
206
heart
163
vasculature
160
blood vessel
112
kidney
90
artery
73
limb
62
bone element
60
blood
60
bodily fluid
45
musculature of body
40
nerve
33
embryo
24
eye
20
spleen
17
vein
4
gonad
4
ovary
4
skeleton
1
lymph node
1
pericardium
1
pituitary gland
1
spinal cord
Project
235
AMP
Genome assembly (visualization)
176
GRCh38
128
hg19
Lab
235
AMP-T2D consortium
Audit category:
3
inconsistent ontology term
Audit category:
4
missing controlled_by
audit.WARNING.category!
inconsistent control read length
BIOSAMPLE
ASSAY
235 results
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Clear Filters
ChIP-seq
total RNA-seq
tissue
layer of hippocampus
23
brain
20
1
substantia nigra
16
1
caudate nucleus
15
1
temporal lobe
15
1
+ See 69 more…
primary cell
astrocyte of the cerebellum
3
brain microvascular endothelial cell
3
choroid plexus epithelial cell
3
See all biosamples
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